Finalize your ancient DNA analysis for publication and collaboration
Organize your repository, write documentation, and prepare for sharing
Use LLMs to help with documentation and reflection
Problem Statement
Organize your code, workflows, and results for reproducibility
Write clear documentation and usage instructions
Prepare your repository for sharing and collaboration
Reflect on your computational process and lessons learned
Why Reproducibility and Collaboration?
Ensures your work can be understood, reused, and built upon by others
Facilitates teamwork and scientific communication
Required for publication and open science
Workshop Workflow: Problem → Prompt → Code → Debug → Result
Problem: Define the reproducibility and sharing challenge
Prompt: Craft an effective LLM prompt
Code: Organize, document, and prepare your repository
Debug: Review for clarity, completeness, and reproducibility
Result: Share your work and reflect on your process
Getting Started: Example LLM Prompt
I need to prepare my ancient DNA analysis repository for publication and collaboration. Please generate a clear README, usage instructions, and a reflection on the computational process and lessons learned.